Dug into this a little more, I would agree that the AI is definitely slow at signing minor leaguers, so should have a couple tweaks for the next patch to help fill their deep minors teams more.
For those relative ratings issues, I don't believe pitches individually are ever changed (ie. they always display as "raw" values). The other cases will depend heavily on the leagues themselves. Depending on the league setup and averages, it can cause issues. Especially if this is the same setup where teams are short on pitchers, it might be throwing off the game calculated average ratings.
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