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1. I plan my leagues before I start, create the Premier/highest league first, then use the automatic financial tool to adjust down. So, the B league will be 10% lower, the C league will be 25% lower, etc. Also be sure to set league reputations accordingly.
2. Leagues can't share feeders or minors. If you want minor affiliates for a league, you'll have to adjust the minor teams around upon promotion/relegation.
3. If you make an association for all your leagues, you'll have one big draft that is a mess and people always complain about. I don't know what "weird ways" you're talking about; I stagger the drafts so they happen in series (i.e. the Premier League on March 1, the B League on March 2, etc.).
4. I don't understand what you're talking about, each minor/feeder can only be affiliated to one league.
5. I create all my major leagues (i.e. the P/R chained leagues) first, then go back and add minors. If you're talking about using the real MLB/MiLB teams from the default setup, that won't ever work. Minor leagues don't work as major leagues.
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